PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00022442-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 660aa    MW: 76495.3 Da    PI: 8.9433
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00022442-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.34e-2126119290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                             Y  Y++++GF+vrk +++k  + g+i+ +tfvC +eg +  ++++      ++++rr++++tr++C+a++ +k++++g++ v+ +++
  SMil_00022442-RA_Salv  26 LYGLYGYSCGFDVRKGTTRKG-KYGQIIYQTFVCIREGINLGTNDEhaetqsKTRKRRRKPSTRCDCRANVIMKRRDNGEYFVSVFNE 112
                            6999*************9998.6677************99777666778888899999****************************** PP

                   FAR1  84 eHnHela 90 
                             HnH+l 
  SMil_00022442-RA_Salv 113 AHNHKLI 119
                            *****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1826119IPR004330FAR1 DNA binding domain
PfamPF105516.5E-28212303IPR018289MULE transposase domain
PROSITE profilePS509669.668496528IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MPIADDVSRL PYVGQVFSSL DEAFDLYGLY GYSCGFDVRK GTTRKGKYGQ IIYQTFVCIR  60
EGINLGTNDE HAETQSKTRK RRRKPSTRCD CRANVIMKRR DNGEYFVSVF NEAHNHKLIS  120
EDCRHFMKYN RKVDSSHQLI MLKCAKVNIG PMRAFRLFKE LVGGYEYVGC TSNDFKKNSY  180
QMNSYPDGSD AQLLLDRLIT NRDLDDQFKY SVSFDATYTT NRYSMIFVPF TGKDNHGGCV  240
TFAAGLLTRE DVHSYSWILK QFVDCMGHSP TMLIIDQDPA LKIAVENVMP DTRHRFCMWH  300
IMMKVALKLP ISLRENADLT SRLYEVAWSE LDEPREFEEK WLGVINEYGL ADNSWFSDMF  360
SKRKYWIPQY FRDLRMSGLF RTTSMSESEN SFFRKYLNRN SNLASFYIHY ESAMQAQRHS  420
YKQLCMTDQT TTPKLKTHTH IEQHASRIYT TKIFLDVQIE ITEAFNRCRI KSMDTAHEDH  480
MYAVDDRSNG VSNVAYNMVA DTFICSCKLF VKKGLVCRHM FVVMHNIGLK AIPEKYILDR  540
WRQNVGAHFI SNGQTQASNK PLMSEVFRCI AIADGNEELS TSLIAELKKW ADANEPRSLN  600
SANSKERIFQ MFYGSKLPTE ITIHPPDPVK TKGSGKRLKS TYEKELQKAK KQRGVSEMWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882RKRRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-70FAR1-related sequence 5